J3_4U25_059
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 4U25|1|AA|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U25_059 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.0954
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4U25|1|AA|U|1116
4U25|1|AA|A|1117
4U25|1|AA|U|1118
*
4U25|1|AA|A|1155
4U25|1|AA|G|1156
4U25|1|AA|A|1157
4U25|1|AA|C|1158
4U25|1|AA|U|1159
4U25|1|AA|G|1160
4U25|1|AA|C|1161
*
4U25|1|AA|G|1175
4U25|1|AA|A|1176
4U25|1|AA|G|1177
4U25|1|AA|G|1178
4U25|1|AA|A|1179
4U25|1|AA|A|1180
4U25|1|AA|G|1181
4U25|1|AA|G|1182
4U25|1|AA|U|1183
4U25|1|AA|G|1184
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AB
- 30S ribosomal protein S2
- Chain AG
- 30S ribosomal protein S7
- Chain AI
- 30S ribosomal protein S9
- Chain AJ
- 30S ribosomal protein S10
- Chain AN
- 30S ribosomal protein S14
- Chain CJ
- 30S ribosomal protein S10
Coloring options: