J3_4U25_068
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UAGAAU*GGAAUACCGGUGG*CGG
- Length
- 22 nucleotides
- Bulged bases
- 4U25|1|CA|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U25|1|CA|U|672
4U25|1|CA|A|673
4U25|1|CA|G|674
4U25|1|CA|A|675
4U25|1|CA|A|676
4U25|1|CA|U|677
*
4U25|1|CA|G|713
4U25|1|CA|G|714
4U25|1|CA|A|715
4U25|1|CA|A|716
4U25|1|CA|U|717
4U25|1|CA|A|718
4U25|1|CA|C|719
4U25|1|CA|C|720
4U25|1|CA|G|721
4U25|1|CA|G|722
4U25|1|CA|U|723
4U25|1|CA|G|724
4U25|1|CA|G|725
*
4U25|1|CA|C|732
4U25|1|CA|G|733
4U25|1|CA|G|734
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CF
- 30S ribosomal protein S6
- Chain CK
- 30S ribosomal protein S11
- Chain CO
- 30S ribosomal protein S15
- Chain CR
- 30S ribosomal protein S18
- Chain CU
- 30S ribosomal protein S21
- Chain DC
- 50S ribosomal protein L2
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