J3_4U25_070

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4U25|1|CA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U25_070 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.226

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4U25|1|CA|C|990
4U25|1|CA|U|991
4U25|1|CA|U|992
4U25|1|CA|G|993
4U25|1|CA|A|994
4U25|1|CA|C|995
4U25|1|CA|A|996
4U25|1|CA|U|997
*
4U25|1|CA|A|1044
4U25|1|CA|C|1045
4U25|1|CA|A|1046
4U25|1|CA|G|1047
*
4U25|1|CA|C|1210
4U25|1|CA|U|1211
4U25|1|CA|U|1212
4U25|1|CA|A|1213
4U25|1|CA|C|1214
4U25|1|CA|G|1215

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CN

30S ribosomal protein S14