J3_4U25_077

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGACCCC*GGGAAA*UA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|U|1344
4U25|1|DA|C|1345
4U25|1|DA|G|1346
4U25|1|DA|A|1347
4U25|1|DA|C|1348
4U25|1|DA|C|1349
4U25|1|DA|C|1350
4U25|1|DA|C|1351
*
4U25|1|DA|G|1380
4U25|1|DA|G|1381
4U25|1|DA|G|1382
4U25|1|DA|A|1383
4U25|1|DA|A|1384
4U25|1|DA|A|1385
*
4U25|1|DA|U|1402
4U25|1|DA|A|1403

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23