J3_4U26_014

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4U26|1|BA|U|686, 4U26|1|BA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U26_014 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0581

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4U26|1|BA|U|683
4U26|1|BA|G|684
4U26|1|BA|A|685
4U26|1|BA|U|686
4U26|1|BA|C|687
4U26|1|BA|U|688
4U26|1|BA|A|689
*
4U26|1|BA|U|773
4U26|1|BA|G|774
4U26|1|BA|G|775
*
4U26|1|BA|C|791
4U26|1|BA|A|792
4U26|1|BA|A|793
4U26|1|BA|A|794

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2