J3_4U26_057

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4U26|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U26_057 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0488

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4U26|1|BA|G|297
4U26|1|BA|G|298
4U26|1|BA|A|299
4U26|1|BA|A|300
4U26|1|BA|G|301
*
4U26|1|BA|C|316
4U26|1|BA|G|317
4U26|1|BA|C|318
4U26|1|BA|G|319
4U26|1|BA|A|320
4U26|1|BA|U|321
4U26|1|BA|A|322
4U26|1|BA|C|323
4U26|1|BA|A|324
4U26|1|BA|G|325
*
4U26|1|BA|C|337
4U26|1|BA|G|338
4U26|1|BA|U|339
4U26|1|BA|A|340
4U26|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24