J3_4U27_061

3D structure

PDB id

4U27 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin and linopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4U27|1|BA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U27_061 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0402

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4U27|1|BA|G|297
4U27|1|BA|G|298
4U27|1|BA|A|299
4U27|1|BA|A|300
4U27|1|BA|G|301
*
4U27|1|BA|C|316
4U27|1|BA|G|317
4U27|1|BA|C|318
4U27|1|BA|G|319
4U27|1|BA|A|320
4U27|1|BA|U|321
4U27|1|BA|A|322
4U27|1|BA|C|323
4U27|1|BA|A|324
4U27|1|BA|G|325
*
4U27|1|BA|C|337
4U27|1|BA|G|338
4U27|1|BA|U|339
4U27|1|BA|A|340
4U27|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BU

50S ribosomal protein L24