3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
Length
28 nucleotides
Bulged bases
4U3M|1|1|A|398, 4U3M|1|1|A|402
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U3M_064 not in the Motif Atlas
Homologous match to J3_8P9A_047
Geometric discrepancy: 0.0424
The information below is about J3_8P9A_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4U3M|1|1|A|369
4U3M|1|1|U|370
4U3M|1|1|G|371
4U3M|1|1|A|372
4U3M|1|1|A|373
4U3M|1|1|A|374
4U3M|1|1|A|375
4U3M|1|1|G|376
4U3M|1|1|A|377
4U3M|1|1|A|378
4U3M|1|1|C|379
*
4U3M|1|1|G|390
4U3M|1|1|A|391
4U3M|1|1|G|392
4U3M|1|1|U|393
4U3M|1|1|G|394
4U3M|1|1|A|395
4U3M|1|1|A|396
4U3M|1|1|A|397
4U3M|1|1|A|398
4U3M|1|1|A|399
4U3M|1|1|G|400
4U3M|1|1|U|401
4U3M|1|1|A|402
4U3M|1|1|C|403
4U3M|1|1|G|404
*
4U3M|1|4|C|19
4U3M|1|4|U|20

Current chains

Chain 1
25s rRNA
Chain 4
5.8s rRNA

Nearby chains

Chain L4
60S ribosomal protein L4-A
Chain M7
60S ribosomal protein L17-A
Chain N6
60S ribosomal protein L26-A
Chain O9
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4264 s