J3_4U4O_032

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

4U4O|1|5|A|817, 4U4O|1|5|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|G|813
4U4O|1|5|U|814
4U4O|1|5|G|815
4U4O|1|5|A|816
4U4O|1|5|A|817
4U4O|1|5|C|818
4U4O|1|5|U|819
4U4O|1|5|A|820
*
4U4O|1|5|U|905
4U4O|1|5|A|906
4U4O|1|5|G|907
*
4U4O|1|5|C|923
4U4O|1|5|G|924
4U4O|1|5|A|925
4U4O|1|5|A|926
4U4O|1|5|C|927

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain l4

60S ribosomal protein L4-A

Chain m5

60S ribosomal protein L15-A

Chain o7

60S ribosomal protein L37-A