J3_4U4O_048
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGACUA*UUACG*CAAAGUCUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 4U4O|1|6|A|1093, 4U4O|1|6|C|1096, 4U4O|1|6|U|1098, 4U4O|1|6|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4O|1|6|C|1034
4U4O|1|6|G|1035
4U4O|1|6|A|1036
4U4O|1|6|C|1037
4U4O|1|6|U|1038
4U4O|1|6|A|1039
*
4U4O|1|6|U|1079
4U4O|1|6|U|1080
4U4O|1|6|A|1081
4U4O|1|6|C|1082
4U4O|1|6|G|1083
*
4U4O|1|6|C|1090
4U4O|1|6|A|1091
4U4O|1|6|A|1092
4U4O|1|6|A|1093
4U4O|1|6|G|1094
4U4O|1|6|U|1095
4U4O|1|6|C|1096
4U4O|1|6|U|1097
4U4O|1|6|U|1098
4U4O|1|6|U|1099
4U4O|1|6|G|1100
4U4O|1|6|G|1101
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d1
- 40S ribosomal protein S21-A
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain d6
- 40S ribosomal protein S26-B
- Chain d7
- 40S ribosomal protein S27-A
- Chain s0
- 40S ribosomal protein S0-A
- Chain s2
- 40S ribosomal protein S2
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