J3_4U4O_056

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAUAUCU*AAGAG*UG

Length

15 nucleotides

Bulged bases

4U4O|1|7|U|12, 4U4O|1|7|A|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|7|C|9
4U4O|1|7|C|10
4U4O|1|7|A|11
4U4O|1|7|U|12
4U4O|1|7|A|13
4U4O|1|7|U|14
4U4O|1|7|C|15
4U4O|1|7|U|16
*
4U4O|1|7|A|63
4U4O|1|7|A|64
4U4O|1|7|G|65
4U4O|1|7|A|66
4U4O|1|7|G|67
*
4U4O|1|7|U|111
4U4O|1|7|G|112

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain l5

60S ribosomal protein L5

Chain m0

60S ribosomal protein L10

Chain m1

60S ribosomal protein L11-B

Chain n1

60S ribosomal protein L21-A