J3_4U4O_060
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAGA*UCUUG
- Length
- 29 nucleotides
- Bulged bases
- 4U4O|1|1|U|343, 4U4O|1|1|A|351, 4U4O|1|4|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4O|1|1|C|340
4U4O|1|1|G|341
4U4O|1|1|A|342
4U4O|1|1|U|343
4U4O|1|1|A|344
4U4O|1|1|G|345
4U4O|1|1|C|346
4U4O|1|1|G|347
4U4O|1|1|A|348
4U4O|1|1|A|349
4U4O|1|1|C|350
4U4O|1|1|A|351
4U4O|1|1|A|352
4U4O|1|1|G|353
4U4O|1|1|U|354
4U4O|1|1|A|355
4U4O|1|1|C|356
*
4U4O|1|1|G|363
4U4O|1|1|G|364
4U4O|1|1|A|365
4U4O|1|1|A|366
4U4O|1|1|A|367
4U4O|1|1|G|368
4U4O|1|1|A|369
*
4U4O|1|4|U|20
4U4O|1|4|C|21
4U4O|1|4|U|22
4U4O|1|4|U|23
4U4O|1|4|G|24
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain L4
- 60S ribosomal protein L4-A
- Chain N6
- 60S ribosomal protein L26-A
- Chain O7
- 60S ribosomal protein L37-A
- Chain O9
- 60S ribosomal protein L39
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