J3_4U4O_089
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAUUCUUCAC*GUAACUGAAU*AGGAAGGAAUAGUUUUC
- Length
- 38 nucleotides
- Bulged bases
- 4U4O|1|5|U|1629, 4U4O|1|5|U|1815, 4U4O|1|5|U|1820, 4U4O|1|5|U|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4O|1|5|G|1623
4U4O|1|5|G|1624
4U4O|1|5|A|1625
4U4O|1|5|U|1626
4U4O|1|5|U|1627
4U4O|1|5|C|1628
4U4O|1|5|U|1629
4U4O|1|5|U|1630
4U4O|1|5|C|1631
4U4O|1|5|A|1632
4U4O|1|5|C|1633
*
4U4O|1|5|G|1640
4U4O|1|5|U|1641
4U4O|1|5|A|1642
4U4O|1|5|A|1643
4U4O|1|5|C|1644
4U4O|1|5|U|1645
4U4O|1|5|G|1646
4U4O|1|5|A|1647
4U4O|1|5|A|1648
4U4O|1|5|U|1649
*
4U4O|1|5|A|1806
4U4O|1|5|G|1807
4U4O|1|5|G|1808
4U4O|1|5|A|1809
4U4O|1|5|A|1810
4U4O|1|5|G|1811
4U4O|1|5|G|1812
4U4O|1|5|A|1813
4U4O|1|5|A|1814
4U4O|1|5|U|1815
4U4O|1|5|A|1816
4U4O|1|5|G|1817
4U4O|1|5|U|1818
4U4O|1|5|U|1819
4U4O|1|5|U|1820
4U4O|1|5|U|1821
4U4O|1|5|C|1822
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain n7
- 60S ribosomal protein L27-A
- Chain o4
- 60S ribosomal protein L34-A
Coloring options: