J3_4U4O_100
3D structure
- PDB id
- 4U4O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Geneticin bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAGACAC*GUGGGUG*UUAGACG
- Length
- 22 nucleotides
- Bulged bases
- 4U4O|1|6|A|1217, 4U4O|1|6|G|1445, 4U4O|1|6|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4O|1|6|C|1215
4U4O|1|6|C|1216
4U4O|1|6|A|1217
4U4O|1|6|G|1218
4U4O|1|6|A|1219
4U4O|1|6|C|1220
4U4O|1|6|A|1221
4U4O|1|6|C|1222
*
4U4O|1|6|G|1261
4U4O|1|6|U|1262
4U4O|1|6|G|1263
4U4O|1|6|G|1264
4U4O|1|6|G|1265
4U4O|1|6|U|1266
4U4O|1|6|G|1267
*
4U4O|1|6|U|1442
4U4O|1|6|U|1443
4U4O|1|6|A|1444
4U4O|1|6|G|1445
4U4O|1|6|A|1446
4U4O|1|6|C|1447
4U4O|1|6|G|1448
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c0
- 40S ribosomal protein S10-A
- Chain c2
- 40S ribosomal protein S12
- Chain d9
- 40S ribosomal protein S29-A
- Chain e1
- Ubiquitin-40S ribosomal protein S31
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