J3_4U4O_101

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UG*UGUCUG*CGAUAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|6|U|1293
4U4O|1|6|G|1294
*
4U4O|1|6|U|1303
4U4O|1|6|G|1304
4U4O|1|6|U|1305
4U4O|1|6|C|1306
4U4O|1|6|U|1307
4U4O|1|6|G|1308
*
4U4O|1|6|C|1317
4U4O|1|6|G|1318
4U4O|1|6|A|1319
4U4O|1|6|U|1320
4U4O|1|6|A|1321
4U4O|1|6|A|1322

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain d6

40S ribosomal protein S26-B

Chain s0

40S ribosomal protein S0-A

Chain s2

40S ribosomal protein S2