J3_4U4Q_072

3D structure

PDB id

4U4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Homoharringtonine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4U4Q|1|2|A|217, 4U4Q|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Q|1|2|A|213
4U4Q|1|2|G|214
4U4Q|1|2|A|215
4U4Q|1|2|U|216
4U4Q|1|2|A|217
4U4Q|1|2|A|218
4U4Q|1|2|A|219
4U4Q|1|2|A|220
4U4Q|1|2|A|221
4U4Q|1|2|A|222
4U4Q|1|2|U|223
4U4Q|1|2|C|224
4U4Q|1|2|A|225
4U4Q|1|2|A|226
4U4Q|1|2|U|227
4U4Q|1|2|G|228
*
4U4Q|1|2|C|237
4U4Q|1|2|U|238
4U4Q|1|2|C|239
4U4Q|1|2|U|240
4U4Q|1|2|U|241
4U4Q|1|2|U|242
4U4Q|1|2|G|243
*
4U4Q|1|2|C|250
4U4Q|1|2|A|251
4U4Q|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A