J3_4U4U_046
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U4U_046 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.1395
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4U4U|1|5|C|3298
4U4U|1|5|A|3299
4U4U|1|5|U|3300
*
4U4U|1|5|A|3314
4U4U|1|5|G|3315
4U4U|1|5|A|3316
4U4U|1|5|U|3317
4U4U|1|5|G|3318
*
4U4U|1|5|C|3388
4U4U|1|5|U|3389
4U4U|1|5|G|3390
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l3
- 60S ribosomal protein L3
- Chain m7
- 60S ribosomal protein L17-A
- Chain o1
- 60S ribosomal protein L31-A
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