J3_4U4U_071

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA

Length

30 nucleotides

Bulged bases

4U4U|1|1|A|3215, 4U4U|1|1|G|3216, 4U4U|1|1|G|3219, 4U4U|1|1|A|3268, 4U4U|1|1|U|3270, 4U4U|1|1|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U4U_071 not in the Motif Atlas

Homologous match to J3_8P9A_064

Geometric discrepancy: 0.163

The information below is about J3_8P9A_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03190.1

Basepair signature

cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

4U4U|1|1|U|3171
4U4U|1|1|A|3172
4U4U|1|1|G|3173
4U4U|1|1|A|3174
4U4U|1|1|U|3175
4U4U|1|1|G|3176
*
4U4U|1|1|C|3212
4U4U|1|1|A|3213
4U4U|1|1|U|3214
4U4U|1|1|A|3215
4U4U|1|1|G|3216
4U4U|1|1|C|3217
4U4U|1|1|A|3218
4U4U|1|1|G|3219
4U4U|1|1|G|3220
*
4U4U|1|1|C|3265
4U4U|1|1|G|3266
4U4U|1|1|A|3267
4U4U|1|1|A|3268
4U4U|1|1|U|3269
4U4U|1|1|U|3270
4U4U|1|1|G|3271
4U4U|1|1|C|3272
4U4U|1|1|A|3273
4U4U|1|1|A|3274
4U4U|1|1|U|3275
4U4U|1|1|G|3276
4U4U|1|1|U|3277
4U4U|1|1|C|3278
4U4U|1|1|A|3279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L6

60S ribosomal protein L6-A

Chain M4

60S ribosomal protein L14-A

Chain M6

60S ribosomal protein L16-A

Chain M7

60S ribosomal protein L17-A

Chain O3

60S ribosomal protein L33-A