J3_4U4Y_069

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UCAAAGAUUAAG*CGCGCAAAU*AGUGACAA

Length

29 nucleotides

Bulged bases

4U4Y|1|2|A|47, 4U4Y|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|U|37
4U4Y|1|2|C|38
4U4Y|1|2|A|39
4U4Y|1|2|A|40
4U4Y|1|2|A|41
4U4Y|1|2|G|42
4U4Y|1|2|A|43
4U4Y|1|2|U|44
4U4Y|1|2|U|45
4U4Y|1|2|A|46
4U4Y|1|2|A|47
4U4Y|1|2|G|48
*
4U4Y|1|2|C|431
4U4Y|1|2|G|432
4U4Y|1|2|C|433
4U4Y|1|2|G|434
4U4Y|1|2|C|435
4U4Y|1|2|A|436
4U4Y|1|2|A|437
4U4Y|1|2|A|438
4U4Y|1|2|U|439
*
4U4Y|1|2|A|464
4U4Y|1|2|G|465
4U4Y|1|2|U|466
4U4Y|1|2|G|467
4U4Y|1|2|A|468
4U4Y|1|2|C|469
4U4Y|1|2|A|470
4U4Y|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A