3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
4U50|1|5|C|2760, 4U50|1|5|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4U50_084 not in the Motif Atlas
Homologous match to J3_8P9A_061
Geometric discrepancy: 0.0498
The information below is about J3_8P9A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4U50|1|5|G|2651
4U50|1|5|U|2652
4U50|1|5|C|2653
*
4U50|1|5|G|2754
4U50|1|5|C|2755
4U50|1|5|C|2756
4U50|1|5|U|2757
4U50|1|5|A|2758
4U50|1|5|U|2759
4U50|1|5|C|2760
4U50|1|5|G|2761
4U50|1|5|A|2762
4U50|1|5|U|2763
4U50|1|5|C|2764
4U50|1|5|C|2765
*
4U50|1|5|G|2793
4U50|1|5|G|2794
4U50|1|5|U|2795
4U50|1|5|G|2796
4U50|1|5|C|2797
4U50|1|5|C|2798

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain m8
60S ribosomal protein L18-A
Chain n1
60S ribosomal protein L21-A
Chain n8
60S ribosomal protein L28
Chain q2
60S ribosomal protein L42-A

Coloring options:


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