J3_4U51_073

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4U51|1|2|A|217, 4U51|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U51|1|2|A|213
4U51|1|2|G|214
4U51|1|2|A|215
4U51|1|2|U|216
4U51|1|2|A|217
4U51|1|2|A|218
4U51|1|2|A|219
4U51|1|2|A|220
4U51|1|2|A|221
4U51|1|2|A|222
4U51|1|2|U|223
4U51|1|2|C|224
4U51|1|2|A|225
4U51|1|2|A|226
4U51|1|2|U|227
4U51|1|2|G|228
*
4U51|1|2|C|237
4U51|1|2|U|238
4U51|1|2|C|239
4U51|1|2|U|240
4U51|1|2|U|241
4U51|1|2|U|242
4U51|1|2|G|243
*
4U51|1|2|C|250
4U51|1|2|A|251
4U51|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A