J3_4U51_084

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU

Length

36 nucleotides

Bulged bases

4U51|1|5|A|3172, 4U51|1|5|G|3173, 4U51|1|5|A|3215, 4U51|1|5|G|3216, 4U51|1|5|G|3219, 4U51|1|5|A|3268, 4U51|1|5|U|3270, 4U51|1|5|C|3272, 4U51|1|5|U|3275, 4U51|1|5|G|3276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U51|1|5|A|3168
4U51|1|5|U|3169
4U51|1|5|A|3170
4U51|1|5|U|3171
4U51|1|5|A|3172
4U51|1|5|G|3173
4U51|1|5|A|3174
4U51|1|5|U|3175
4U51|1|5|G|3176
*
4U51|1|5|C|3212
4U51|1|5|A|3213
4U51|1|5|U|3214
4U51|1|5|A|3215
4U51|1|5|G|3216
4U51|1|5|C|3217
4U51|1|5|A|3218
4U51|1|5|G|3219
4U51|1|5|G|3220
*
4U51|1|5|C|3265
4U51|1|5|G|3266
4U51|1|5|A|3267
4U51|1|5|A|3268
4U51|1|5|U|3269
4U51|1|5|U|3270
4U51|1|5|G|3271
4U51|1|5|C|3272
4U51|1|5|A|3273
4U51|1|5|A|3274
4U51|1|5|U|3275
4U51|1|5|G|3276
4U51|1|5|U|3277
4U51|1|5|C|3278
4U51|1|5|A|3279
4U51|1|5|U|3280
4U51|1|5|U|3281
4U51|1|5|U|3282

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l6

60S ribosomal protein L6-A

Chain m4

60S ribosomal protein L14-A

Chain m6

60S ribosomal protein L16-A

Chain o3

60S ribosomal protein L33-A