J3_4U52_001
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 4U52|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.073
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|1|C|113
4U52|1|1|A|114
4U52|1|1|A|115
4U52|1|1|A|116
4U52|1|1|U|117
4U52|1|1|U|118
4U52|1|1|U|119
4U52|1|1|G|120
4U52|1|1|A|121
4U52|1|1|A|122
4U52|1|1|A|123
*
4U52|1|1|U|149
4U52|1|1|A|150
4U52|1|1|A|151
4U52|1|1|U|152
4U52|1|1|U|153
4U52|1|1|U|154
4U52|1|1|G|155
4U52|1|1|G|156
4U52|1|1|A|157
4U52|1|1|G|158
*
4U52|1|1|C|263
4U52|1|1|G|264
4U52|1|1|A|265
4U52|1|1|A|266
4U52|1|1|G|267
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain L8
- 60S ribosomal protein L8-A
- Chain M3
- 60S ribosomal protein L13-A
- Chain M5
- 60S ribosomal protein L15-A
- Chain O5
- 60S ribosomal protein L35-A
- Chain O6
- 60S ribosomal protein L36-A
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