J3_4U52_050
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4U52|1|6|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_050 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.053
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4U52|1|6|A|881
4U52|1|6|U|882
4U52|1|6|C|883
4U52|1|6|A|884
*
4U52|1|6|U|928
4U52|1|6|A|929
4U52|1|6|A|930
4U52|1|6|C|931
4U52|1|6|U|932
4U52|1|6|A|933
4U52|1|6|C|934
4U52|1|6|U|935
4U52|1|6|G|936
*
4U52|1|6|C|943
4U52|1|6|A|944
4U52|1|6|U|945
4U52|1|6|U|946
4U52|1|6|U|947
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain c4
- 40S ribosomal protein S14-A
- Chain d6
- 40S ribosomal protein S26-B
- Chain q3
- 60S ribosomal protein L43-A
- Chain s1
- 40S ribosomal protein S1-A
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