J3_4U52_073
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 4U52|1|2|U|1390, 4U52|1|2|U|1413, 4U52|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U52_073 not in the Motif Atlas
- Homologous match to J3_8P9A_083
- Geometric discrepancy: 0.1068
- The information below is about J3_8P9A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88233.1
- Basepair signature
- cWW-F-tWH-cWW-cWW-F-tSW-tWS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4U52|1|2|A|1336
4U52|1|2|A|1337
4U52|1|2|C|1338
*
4U52|1|2|G|1386
4U52|1|2|G|1387
4U52|1|2|A|1388
4U52|1|2|C|1389
4U52|1|2|U|1390
4U52|1|2|A|1391
*
4U52|1|2|U|1407
4U52|1|2|G|1408
4U52|1|2|G|1409
4U52|1|2|A|1410
4U52|1|2|A|1411
4U52|1|2|G|1412
4U52|1|2|U|1413
4U52|1|2|U|1414
4U52|1|2|U|1415
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C6
- 40S ribosomal protein S16-A
- Chain C7
- 40S ribosomal protein S17-A
- Chain D0
- 40S ribosomal protein S20
- Chain D9
- 40S ribosomal protein S29-A
- Chain S5
- 40S ribosomal protein S5
- Chain SR
- Guanine nucleotide-binding protein subunit beta-like protein
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