J3_4U52_079
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAG*CACCAU
- Length
- 22 nucleotides
- Bulged bases
- 4U52|1|5|C|1556, 4U52|1|5|A|1558, 4U52|1|5|C|1581, 4U52|1|5|C|1582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U52|1|5|A|1537
4U52|1|5|G|1538
4U52|1|5|A|1539
4U52|1|5|U|1540
4U52|1|5|G|1541
4U52|1|5|G|1542
*
4U52|1|5|C|1551
4U52|1|5|G|1552
4U52|1|5|U|1553
4U52|1|5|U|1554
4U52|1|5|U|1555
4U52|1|5|C|1556
4U52|1|5|A|1557
4U52|1|5|A|1558
4U52|1|5|A|1559
4U52|1|5|G|1560
*
4U52|1|5|C|1579
4U52|1|5|A|1580
4U52|1|5|C|1581
4U52|1|5|C|1582
4U52|1|5|A|1583
4U52|1|5|U|1584
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain n5
- 60S ribosomal protein L25
- Chain o7
- 60S ribosomal protein L37-A
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