J3_4U53_074

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4U53|1|2|A|217, 4U53|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|2|A|213
4U53|1|2|G|214
4U53|1|2|A|215
4U53|1|2|U|216
4U53|1|2|A|217
4U53|1|2|A|218
4U53|1|2|A|219
4U53|1|2|A|220
4U53|1|2|A|221
4U53|1|2|A|222
4U53|1|2|U|223
4U53|1|2|C|224
4U53|1|2|A|225
4U53|1|2|A|226
4U53|1|2|U|227
4U53|1|2|G|228
*
4U53|1|2|C|237
4U53|1|2|U|238
4U53|1|2|C|239
4U53|1|2|U|240
4U53|1|2|U|241
4U53|1|2|U|242
4U53|1|2|G|243
*
4U53|1|2|C|250
4U53|1|2|A|251
4U53|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A