J3_4U53_088
3D structure
- PDB id
- 4U53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AACC*GGGACUA*UGGAAGUUU
- Length
- 20 nucleotides
- Bulged bases
- 4U53|1|6|U|1390, 4U53|1|6|U|1413, 4U53|1|6|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U53|1|6|A|1336
4U53|1|6|A|1337
4U53|1|6|C|1338
4U53|1|6|C|1339
*
4U53|1|6|G|1385
4U53|1|6|G|1386
4U53|1|6|G|1387
4U53|1|6|A|1388
4U53|1|6|C|1389
4U53|1|6|U|1390
4U53|1|6|A|1391
*
4U53|1|6|U|1407
4U53|1|6|G|1408
4U53|1|6|G|1409
4U53|1|6|A|1410
4U53|1|6|A|1411
4U53|1|6|G|1412
4U53|1|6|U|1413
4U53|1|6|U|1414
4U53|1|6|U|1415
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain d0
- 40S ribosomal protein S20
- Chain d9
- 40S ribosomal protein S29-A
- Chain s5
- 40S ribosomal protein S5
- Chain sR
- Guanine nucleotide-binding protein subunit beta-like protein
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