J3_4U55_073

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4U55|1|2|A|217, 4U55|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U55|1|2|A|213
4U55|1|2|G|214
4U55|1|2|A|215
4U55|1|2|U|216
4U55|1|2|A|217
4U55|1|2|A|218
4U55|1|2|A|219
4U55|1|2|A|220
4U55|1|2|A|221
4U55|1|2|A|222
4U55|1|2|U|223
4U55|1|2|C|224
4U55|1|2|A|225
4U55|1|2|A|226
4U55|1|2|U|227
4U55|1|2|G|228
*
4U55|1|2|C|237
4U55|1|2|U|238
4U55|1|2|C|239
4U55|1|2|U|240
4U55|1|2|U|241
4U55|1|2|U|242
4U55|1|2|G|243
*
4U55|1|2|C|250
4U55|1|2|A|251
4U55|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A