J3_4U67_015

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

4U67|1|X|G|514, 4U67|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4U67_015 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.054

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

4U67|1|X|G|30
4U67|1|X|C|31
*
4U67|1|X|G|485
4U67|1|X|U|486
4U67|1|X|G|487
4U67|1|X|A|488
4U67|1|X|A|489
4U67|1|X|A|490
4U67|1|X|A|491
4U67|1|X|G|492
4U67|1|X|A|493
4U67|1|X|A|494
4U67|1|X|C|495
*
4U67|1|X|G|506
4U67|1|X|A|507
4U67|1|X|G|508
4U67|1|X|U|509
4U67|1|X|G|510
4U67|1|X|A|511
4U67|1|X|A|512
4U67|1|X|A|513
4U67|1|X|G|514
4U67|1|X|A|515
4U67|1|X|G|516
4U67|1|X|A|517
4U67|1|X|A|518
4U67|1|X|C|519
4U67|1|X|C|520

Current chains

Chain X

23s RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24