J3_4U67_026
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CCCAUAG*CG*UCAG
- Length
- 13 nucleotides
- Bulged bases
- 4U67|1|Y|C|14, 4U67|1|Y|U|16, 4U67|1|Y|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4U67_026 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.352
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4U67|1|Y|C|12
4U67|1|Y|C|13
4U67|1|Y|C|14
4U67|1|Y|A|15
4U67|1|Y|U|16
4U67|1|Y|A|17
4U67|1|Y|G|18
*
4U67|1|Y|C|70
4U67|1|Y|G|71
*
4U67|1|Y|U|110
4U67|1|Y|C|111
4U67|1|Y|A|112
4U67|1|Y|G|113
Current chains
- Chain Y
- 5s RNA
Nearby chains
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
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