J3_4U6F_033

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

4U6F|1|5|A|817, 4U6F|1|5|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|5|G|813
4U6F|1|5|U|814
4U6F|1|5|G|815
4U6F|1|5|A|816
4U6F|1|5|A|817
4U6F|1|5|C|818
4U6F|1|5|U|819
4U6F|1|5|A|820
*
4U6F|1|5|U|905
4U6F|1|5|A|906
4U6F|1|5|G|907
*
4U6F|1|5|C|923
4U6F|1|5|G|924
4U6F|1|5|A|925
4U6F|1|5|A|926
4U6F|1|5|C|927

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain l4

60S ribosomal protein L4-A

Chain m5

60S ribosomal protein L15-A

Chain o7

60S ribosomal protein L37-A

Chain o9

60S ribosomal protein L39