J3_4U6F_070

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

4U6F|1|2|A|217, 4U6F|1|2|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|2|A|213
4U6F|1|2|G|214
4U6F|1|2|A|215
4U6F|1|2|U|216
4U6F|1|2|A|217
4U6F|1|2|A|218
4U6F|1|2|A|219
4U6F|1|2|A|220
4U6F|1|2|A|221
4U6F|1|2|A|222
4U6F|1|2|U|223
4U6F|1|2|C|224
4U6F|1|2|A|225
4U6F|1|2|A|226
4U6F|1|2|U|227
4U6F|1|2|G|228
*
4U6F|1|2|C|237
4U6F|1|2|U|238
4U6F|1|2|C|239
4U6F|1|2|U|240
4U6F|1|2|U|241
4U6F|1|2|U|242
4U6F|1|2|G|243
*
4U6F|1|2|C|250
4U6F|1|2|A|251
4U6F|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A