J3_4V4G_017

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4G_017 not in the Motif Atlas

Homologous match to J3_9DFE_001

Geometric discrepancy: 0.3556

The information below is about J3_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

4V4G|1|BB|G|30
4V4G|1|BB|C|31
*
4V4G|1|BB|G|485
4V4G|1|BB|U|486
4V4G|1|BB|G|487
4V4G|1|BB|A|488
4V4G|1|BB|A|489
4V4G|1|BB|A|490
4V4G|1|BB|A|491
4V4G|1|BB|G|492
*
4V4G|1|BB|C|519
4V4G|1|BB|C|520

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BR

50S ribosomal protein L20

Chain BT

50S ribosomal protein L22

Chain BV

50S ribosomal protein L24