J3_4V4G_018

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

4V4G|1|BB|U|460, 4V4G|1|BB|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|BB|C|32
4V4G|1|BB|C|33
4V4G|1|BB|U|34
4V4G|1|BB|G|35
*
4V4G|1|BB|C|457
4V4G|1|BB|G|458
4V4G|1|BB|A|459
4V4G|1|BB|U|460
4V4G|1|BB|A|461
4V4G|1|BB|G|462
4V4G|1|BB|C|463
4V4G|1|BB|G|464
4V4G|1|BB|C|465
4V4G|1|BB|A|466
4V4G|1|BB|U|467
4V4G|1|BB|A|468
4V4G|1|BB|G|469
4V4G|1|BB|U|470
4V4G|1|BB|A|471
4V4G|1|BB|C|472
*
4V4G|1|BB|G|479
4V4G|1|BB|G|480
4V4G|1|BB|A|481
4V4G|1|BB|A|482
4V4G|1|BB|A|483
4V4G|1|BB|G|484

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain B4

50S ribosomal protein L34

Chain BF

50S ribosomal protein L4

Chain BR

50S ribosomal protein L20

Chain BU

50S ribosomal protein L23

Chain BV

50S ribosomal protein L24