J3_4V4G_023

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAGGAGGUUG*CACCCUUCAAAGAGUG*CUCACUG

Length

33 nucleotides

Bulged bases

4V4G|1|BB|U|1072, 4V4G|1|BB|C|1089, 4V4G|1|BB|G|1100

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|BB|C|1064
4V4G|1|BB|A|1065
4V4G|1|BB|G|1066
4V4G|1|BB|G|1067
4V4G|1|BB|A|1068
4V4G|1|BB|G|1069
4V4G|1|BB|G|1070
4V4G|1|BB|U|1071
4V4G|1|BB|U|1072
4V4G|1|BB|G|1073
*
4V4G|1|BB|C|1087
4V4G|1|BB|A|1088
4V4G|1|BB|C|1089
4V4G|1|BB|C|1090
4V4G|1|BB|C|1091
4V4G|1|BB|U|1092
4V4G|1|BB|U|1093
4V4G|1|BB|C|1094
4V4G|1|BB|A|1095
4V4G|1|BB|A|1096
4V4G|1|BB|A|1097
4V4G|1|BB|G|1098
4V4G|1|BB|A|1099
4V4G|1|BB|G|1100
4V4G|1|BB|U|1101
4V4G|1|BB|G|1102
*
4V4G|1|BB|C|1111
4V4G|1|BB|U|1112
4V4G|1|BB|C|1113
4V4G|1|BB|A|1114
4V4G|1|BB|C|1115
4V4G|1|BB|U|1116
4V4G|1|BB|G|1117

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L11

Chain BN

50S ribosomal protein L16

Chain BW

general stress protein Ctc