J3_4V4G_060
3D structure
- PDB id
- 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 11.5 Å
Loop
- Sequence
- GCC*GCUUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V4G|1|DB|A|2371, 4V4G|1|DB|C|2403, 4V4G|1|DB|A|2405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4G_060 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.4557
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V4G|1|DB|G|2261
4V4G|1|DB|C|2262
4V4G|1|DB|C|2263
*
4V4G|1|DB|G|2363
4V4G|1|DB|C|2364
4V4G|1|DB|U|2365
4V4G|1|DB|U|2366
4V4G|1|DB|A|2367
4V4G|1|DB|G|2368
4V4G|1|DB|U|2369
4V4G|1|DB|G|2370
4V4G|1|DB|A|2371
4V4G|1|DB|A|2372
4V4G|1|DB|C|2373
4V4G|1|DB|C|2374
*
4V4G|1|DB|G|2400
4V4G|1|DB|A|2401
4V4G|1|DB|U|2402
4V4G|1|DB|C|2403
4V4G|1|DB|A|2404
4V4G|1|DB|A|2405
4V4G|1|DB|C|2406
Current chains
- Chain DB
- 23S RIBOSOMAL RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L31
- Chain D3
- 50S ribosomal protein L33
- Chain D5
- 50S ribosomal protein L35
- Chain DM
- 50S ribosomal protein L15
- Chain DX
- 50S ribosomal protein L27
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