J3_4V4G_135

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

UAGGGAACCCGG*CUGGGGUGCC*GGAGCCCUA

Length

31 nucleotides

Bulged bases

4V4G|1|IA|G|1002, 4V4G|1|IA|A|1004, 4V4G|1|IA|G|1024, 4V4G|1|IA|U|1025, 4V4G|1|IA|G|1026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|IA|U|1000
4V4G|1|IA|A|1001
4V4G|1|IA|G|1002
4V4G|1|IA|G|1003
4V4G|1|IA|G|2003
4V4G|1|IA|A|1004
4V4G|1|IA|A|1005
4V4G|1|IA|C|1006
4V4G|1|IA|C|1007
4V4G|1|IA|C|1008
4V4G|1|IA|G|1009
4V4G|1|IA|G|1010
*
4V4G|1|IA|C|1019
4V4G|1|IA|U|1020
4V4G|1|IA|G|1021
4V4G|1|IA|G|1022
4V4G|1|IA|G|1023
4V4G|1|IA|G|1024
4V4G|1|IA|U|1025
4V4G|1|IA|G|1026
4V4G|1|IA|C|1027
4V4G|1|IA|C|1028
*
4V4G|1|IA|G|1033
4V4G|1|IA|G|1034
4V4G|1|IA|A|1035
4V4G|1|IA|G|1036
4V4G|1|IA|C|1037
4V4G|1|IA|C|1038
4V4G|1|IA|C|1039
4V4G|1|IA|U|1040
4V4G|1|IA|A|1041

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain FG

50S ribosomal protein L5

Chain IN

30S ribosomal protein S14