J3_4V4G_139

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAAUGC*GCCCAGUUC*GCCG

Length

19 nucleotides

Bulged bases

4V4G|1|IA|U|1240, 4V4G|1|IA|C|1297, 4V4G|1|IA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|IA|C|1237
4V4G|1|IA|A|1238
4V4G|1|IA|A|1239
4V4G|1|IA|U|1240
4V4G|1|IA|G|1241
4V4G|1|IA|C|1242
*
4V4G|1|IA|G|1295
4V4G|1|IA|C|1296
4V4G|1|IA|C|1297
4V4G|1|IA|C|1298
4V4G|1|IA|A|1299
4V4G|1|IA|G|1300
4V4G|1|IA|U|1301
4V4G|1|IA|U|1302
4V4G|1|IA|C|1303
*
4V4G|1|IA|G|1334
4V4G|1|IA|C|1335
4V4G|1|IA|C|1336
4V4G|1|IA|G|1337

Current chains

Chain IA

16S ribosomal RNA

Nearby chains

Chain IG

30S ribosomal protein S7

Chain IM

30S ribosomal protein S13