J3_4V4G_141

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GC*GUGAAAAGAACCCC*GGGGAGUGAAAGAGAACC

Length

34 nucleotides

Bulged bases

4V4G|1|JB|G|514, 4V4G|1|JB|G|516, 4V4G|1|JB|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|JB|G|30
4V4G|1|JB|C|31
*
4V4G|1|JB|G|485
4V4G|1|JB|U|486
4V4G|1|JB|G|487
4V4G|1|JB|A|488
4V4G|1|JB|A|489
4V4G|1|JB|A|490
4V4G|1|JB|A|491
4V4G|1|JB|G|492
4V4G|1|JB|A|493
4V4G|1|JB|A|494
4V4G|1|JB|C|495
4V4G|1|JB|C|496
4V4G|1|JB|C|497
4V4G|1|JB|C|498
*
4V4G|1|JB|G|503
4V4G|1|JB|G|504
4V4G|1|JB|G|505
4V4G|1|JB|G|506
4V4G|1|JB|A|507
4V4G|1|JB|G|508
4V4G|1|JB|U|509
4V4G|1|JB|G|510
4V4G|1|JB|A|511
4V4G|1|JB|A|512
4V4G|1|JB|A|513
4V4G|1|JB|G|514
4V4G|1|JB|A|515
4V4G|1|JB|G|516
4V4G|1|JB|A|517
4V4G|1|JB|A|518
4V4G|1|JB|C|519
4V4G|1|JB|C|520

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains

Chain JR

50S ribosomal protein L20

Chain JT

50S ribosomal protein L22

Chain JU

50S ribosomal protein L23

Chain JV

50S ribosomal protein L24