J3_4V4G_151

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAAUG*UUGGUACGCUCAAGGGCGAUCG*CGGUCACAUGCCUCAGACGUAUCGGGAGCUUCCUCGGAAGCGAAGUUG

Length

75 nucleotides

Bulged bases

4V4G|1|JB|A|1458, 4V4G|1|JB|U|1459, 4V4G|1|JB|U|1482, 4V4G|1|JB|G|1483, 4V4G|1|JB|C|1489, 4V4G|1|JB|U|1490, 4V4G|1|JB|C|1524, 4V4G|1|JB|A|1525, 4V4G|1|JB|U|1526, 4V4G|1|JB|U|1530, 4V4G|1|JB|A|1532, 4V4G|1|JB|A|1534, 4V4G|1|JB|U|1539, 4V4G|1|JB|U|1551, 4V4G|1|JB|G|1562

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|JB|C|1456
4V4G|1|JB|A|1457
4V4G|1|JB|A|1458
4V4G|1|JB|U|1459
4V4G|1|JB|G|1460
*
4V4G|1|JB|U|1481
4V4G|1|JB|U|1482
4V4G|1|JB|G|1483
4V4G|1|JB|G|1484
4V4G|1|JB|U|1485
4V4G|1|JB|A|1486
4V4G|1|JB|C|1487
4V4G|1|JB|G|1488
4V4G|1|JB|C|1489
4V4G|1|JB|U|1490
4V4G|1|JB|C|1491
4V4G|1|JB|A|1492
4V4G|1|JB|A|1493
4V4G|1|JB|G|1494
4V4G|1|JB|G|1495
4V4G|1|JB|G|1496
4V4G|1|JB|C|1497
4V4G|1|JB|G|1498
4V4G|1|JB|A|1499
4V4G|1|JB|U|1500
4V4G|1|JB|C|1501
4V4G|1|JB|G|1502
*
4V4G|1|JB|C|1518
4V4G|1|JB|G|1519
4V4G|1|JB|G|1520
4V4G|1|JB|U|1521
4V4G|1|JB|C|1522
4V4G|1|JB|A|1523
4V4G|1|JB|C|1524
4V4G|1|JB|A|1525
4V4G|1|JB|U|1526
4V4G|1|JB|G|1527
4V4G|1|JB|C|1528
4V4G|1|JB|C|1529
4V4G|1|JB|U|1530
4V4G|1|JB|C|1531
4V4G|1|JB|A|1532
4V4G|1|JB|G|1533
4V4G|1|JB|A|1534
4V4G|1|JB|C|1535
4V4G|1|JB|G|1536
4V4G|1|JB|U|1537
4V4G|1|JB|A|1538
4V4G|1|JB|U|1539
4V4G|1|JB|C|1540
4V4G|1|JB|G|1541
4V4G|1|JB|G|1542
4V4G|1|JB|G|1543
4V4G|1|JB|A|1544
4V4G|1|JB|G|1545
4V4G|1|JB|C|1546
4V4G|1|JB|U|1547
4V4G|1|JB|U|1548
4V4G|1|JB|C|1549
4V4G|1|JB|C|1550
4V4G|1|JB|U|1551
4V4G|1|JB|C|1552
4V4G|1|JB|G|1553
4V4G|1|JB|G|1554
4V4G|1|JB|A|1555
4V4G|1|JB|A|1556
4V4G|1|JB|G|1557
4V4G|1|JB|C|1558
4V4G|1|JB|G|1559
4V4G|1|JB|A|1560
4V4G|1|JB|A|1561
4V4G|1|JB|G|1562
4V4G|1|JB|U|1563
4V4G|1|JB|U|1564
4V4G|1|JB|G|1565

Current chains

Chain JB

23S RIBOSOMAL RNA

Nearby chains