J3_4V4H_023

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

4V4H|1|BB|U|2320, 4V4H|1|BB|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4H_023 not in the Motif Atlas

Homologous match to J3_5J7L_071

Geometric discrepancy: 0.509

The information below is about J3_5J7L_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44961.1

Basepair signature

cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F

Number of instances in this motif group

1

Unit IDs

4V4H|1|BB|C|2295
4V4H|1|BB|U|2296
4V4H|1|BB|A|2297
4V4H|1|BB|A|2298
4V4H|1|BB|U|2299
*
4V4H|1|BB|A|2317
4V4H|1|BB|G|2318
4V4H|1|BB|G|2319
4V4H|1|BB|U|2320
4V4H|1|BB|U|2321
4V4H|1|BB|A|2322
4V4H|1|BB|G|2323
*
4V4H|1|BB|C|2332
4V4H|1|BB|A|2333
4V4H|1|BB|U|2334
4V4H|1|BB|A|2335
4V4H|1|BB|A|2336
4V4H|1|BB|G|2337

Current chains

Chain BB

23S RIBOSOMAL RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BF

50S RIBOSOMAL PROTEIN L5

Chain BO

50S RIBOSOMAL PROTEIN L18

Chain BW

50S RIBOSOMAL PROTEIN L27