J3_4V4H_043

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V4H|1|DB|U|686, 4V4H|1|DB|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4H_043 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0816

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V4H|1|DB|U|683
4V4H|1|DB|G|684
4V4H|1|DB|A|685
4V4H|1|DB|U|686
4V4H|1|DB|C|687
4V4H|1|DB|U|688
4V4H|1|DB|A|689
*
4V4H|1|DB|U|773
4V4H|1|DB|G|774
4V4H|1|DB|G|775
*
4V4H|1|DB|C|791
4V4H|1|DB|A|792
4V4H|1|DB|A|793
4V4H|1|DB|A|794

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D2

50S RIBOSOMAL PROTEIN L34

Chain DC

50S RIBOSOMAL PROTEIN L2

Chain DE

50S RIBOSOMAL PROTEIN L4