J3_4V4Q_017

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V4Q|1|BB|U|686, 4V4Q|1|BB|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Q_017 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0756

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V4Q|1|BB|U|683
4V4Q|1|BB|G|684
4V4Q|1|BB|A|685
4V4Q|1|BB|U|686
4V4Q|1|BB|C|687
4V4Q|1|BB|U|688
4V4Q|1|BB|A|689
*
4V4Q|1|BB|U|773
4V4Q|1|BB|G|774
4V4Q|1|BB|G|775
*
4V4Q|1|BB|C|791
4V4Q|1|BB|A|792
4V4Q|1|BB|A|793
4V4Q|1|BB|A|794

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2