J3_4V4Q_044

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4Q_044 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0697

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V4Q|1|DB|C|698
4V4Q|1|DB|A|699
4V4Q|1|DB|G|700
*
4V4Q|1|DB|C|732
4V4Q|1|DB|G|733
4V4Q|1|DB|A|734
4V4Q|1|DB|A|735
4V4Q|1|DB|C|736
*
4V4Q|1|DB|G|760
4V4Q|1|DB|A|761
4V4Q|1|DB|U|762
4V4Q|1|DB|G|763

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2