J3_4V4Q_055
3D structure
- PDB id
- 4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 4V4Q|1|AA|U|1212, 4V4Q|1|AA|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4Q_055 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.2005
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V4Q|1|AA|C|990
4V4Q|1|AA|U|991
4V4Q|1|AA|U|992
4V4Q|1|AA|G|993
4V4Q|1|AA|A|994
4V4Q|1|AA|C|995
4V4Q|1|AA|A|996
4V4Q|1|AA|U|997
*
4V4Q|1|AA|A|1044
4V4Q|1|AA|C|1045
4V4Q|1|AA|A|1046
4V4Q|1|AA|G|1047
*
4V4Q|1|AA|C|1210
4V4Q|1|AA|U|1211
4V4Q|1|AA|U|1212
4V4Q|1|AA|A|1213
4V4Q|1|AA|C|1214
4V4Q|1|AA|G|1215
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AN
- 30S ribosomal protein S14
Coloring options: