3D structure

PDB id
4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
Experimental method
X-RAY DIFFRACTION
Resolution
3.46 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
4V4Q|1|AA|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V4Q_057 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1204
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V4Q|1|AA|U|1116
4V4Q|1|AA|A|1117
4V4Q|1|AA|U|1118
*
4V4Q|1|AA|A|1155
4V4Q|1|AA|G|1156
4V4Q|1|AA|A|1157
4V4Q|1|AA|C|1158
4V4Q|1|AA|U|1159
4V4Q|1|AA|G|1160
4V4Q|1|AA|C|1161
*
4V4Q|1|AA|G|1175
4V4Q|1|AA|A|1176
4V4Q|1|AA|G|1177
4V4Q|1|AA|G|1178
4V4Q|1|AA|A|1179
4V4Q|1|AA|A|1180
4V4Q|1|AA|G|1181
4V4Q|1|AA|G|1182
4V4Q|1|AA|U|1183
4V4Q|1|AA|G|1184

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S2
Chain AG
30S ribosomal protein S7
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14
Chain CJ
30S ribosomal protein S10

Coloring options:


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