J3_4V4Q_060
3D structure
- PDB id
- 4V4Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- UCGACCC*GGAAA*UA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4Q_060 not in the Motif Atlas
- Homologous match to J3_5J7L_043
- Geometric discrepancy: 0.5368
- The information below is about J3_5J7L_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92705.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4Q|1|BB|U|1344
4V4Q|1|BB|C|1345
4V4Q|1|BB|G|1346
4V4Q|1|BB|A|1347
4V4Q|1|BB|C|1348
4V4Q|1|BB|C|1349
4V4Q|1|BB|C|1350
*
4V4Q|1|BB|G|1381
4V4Q|1|BB|G|1382
4V4Q|1|BB|A|1383
4V4Q|1|BB|A|1384
4V4Q|1|BB|A|1385
*
4V4Q|1|BB|U|1402
4V4Q|1|BB|A|1403
Current chains
- Chain BB
- 23S ribosomal RNA
Nearby chains
- Chain BT
- 50S ribosomal protein L23
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