J3_4V4R_036

3D structure

PDB id

4V4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.9 Å

Loop

Sequence

GAC*GCCAGAAG*CGUGGUGGGGAAGCCCGUACGGGUGACAACC

Length

42 nucleotides

Bulged bases

4V4R|1|BA|A|444|||A, 4V4R|1|BA|A|1472, 4V4R|1|BA|A|1536, 4V4R|1|BA|C|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4R|1|BA|G|1444
4V4R|1|BA|A|444|||A
4V4R|1|BA|C|1445
*
4V4R|1|BA|G|1466
4V4R|1|BA|C|1467
4V4R|1|BA|C|1468
4V4R|1|BA|A|1469
4V4R|1|BA|G|1470
4V4R|1|BA|A|1471
4V4R|1|BA|A|1472
4V4R|1|BA|G|1473
*
4V4R|1|BA|C|1518
4V4R|1|BA|G|1519
4V4R|1|BA|U|1520
4V4R|1|BA|G|1521
4V4R|1|BA|G|1522
4V4R|1|BA|U|1523
4V4R|1|BA|G|1524
4V4R|1|BA|G|1525
4V4R|1|BA|G|1526
4V4R|1|BA|G|1527
4V4R|1|BA|A|1528
4V4R|1|BA|A|1529
4V4R|1|BA|G|1530
4V4R|1|BA|C|1531
4V4R|1|BA|C|1532
4V4R|1|BA|C|1533
4V4R|1|BA|G|1534
4V4R|1|BA|U|1535
4V4R|1|BA|A|1536
4V4R|1|BA|C|1537
4V4R|1|BA|G|1538
4V4R|1|BA|G|1539
4V4R|1|BA|G|1540
4V4R|1|BA|U|1541
4V4R|1|BA|G|1542
4V4R|1|BA|A|1543
4V4R|1|BA|C|1544
4V4R|1|BA|A|1545
4V4R|1|BA|A|545|||A
4V4R|1|BA|C|1546
4V4R|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains