J3_4V4T_001
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- GC*GCGAAUCU*AGC
- Length
- 13 nucleotides
- Bulged bases
- 4V4T|1|AA|C|361|||A
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4T_001 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.1788
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V4T|1|AA|G|46
4V4T|1|AA|C|47
*
4V4T|1|AA|G|361
4V4T|1|AA|C|361|||A
4V4T|1|AA|G|362
4V4T|1|AA|A|363
4V4T|1|AA|A|364
4V4T|1|AA|U|365
4V4T|1|AA|C|366
4V4T|1|AA|U|367
*
4V4T|1|AA|A|393
4V4T|1|AA|G|394
4V4T|1|AA|C|395
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AL
- 30S ribosomal protein S12
- Chain AP
- 30S ribosomal protein S16
- Chain AU
- 30S ribosomal protein Thx
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